[jira] [Created] (FLINK-15906) physical memory exceeded causing being killed by yarn

[Shang Yuanchun (Jira)]

liupengcheng created FLINK-15906:
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             Summary: physical memory exceeded causing being killed by yarn
                 Key: FLINK-15906
                 URL: https://issues.apache.org/jira/browse/FLINK-15906
             Project: Flink
          Issue Type: Bug
            Reporter: liupengcheng


Recently, we encoutered this issue when testing TPCDS query with 100g data. 

I first meet this issue when I only set the `taskmanager.memory.total-process.size` to `4g` with `-tm` option. Then I try to increase the jvmOverhead size with following arguments, but still failed.
{code:java}
taskmanager.memory.jvm-overhead.min: 640m
taskmanager.memory.jvm-metaspace: 128m
taskmanager.memory.task.heap.size: 1408m
taskmanager.memory.framework.heap.size: 128m
taskmanager.memory.framework.off-heap.size: 128m
taskmanager.memory.managed.size: 1408m
taskmanager.memory.shuffle.max: 256m
{code}
{code:java}
java.lang.Exception: [2020-02-05 11:31:32.345]Container [pid=101677,containerID=container_e08_1578903621081_4785_01_000051] is running 46342144B beyond the 'PHYSICAL' memory limit. Current usage: 4.04 GB of 4 GB physical memory used; 17.68 GB of 40 GB virtual memory used. Killing container.java.lang.Exception: [2020-02-05 11:31:32.345]Container [pid=101677,containerID=container_e08_1578903621081_4785_01_000051] is running 46342144B beyond the 'PHYSICAL' memory limit. Current usage: 4.04 GB of 4 GB physical memory used; 17.68 GB of 40 GB virtual memory used. Killing container.Dump of the process-tree for container_e08_1578903621081_4785_01_000051 : |- PID PPID PGRPID SESSID CMD_NAME USER_MODE_TIME(MILLIS) SYSTEM_TIME(MILLIS) VMEM_USAGE(BYTES) RSSMEM_USAGE(PAGES) FULL_CMD_LINE |- 101938 101677 101677 101677 (java) 25762 3571 18867417088 1059157 /opt/soft/openjdk1.8.0/bin/java -Dhadoop.root.logfile=syslog -Xmx1610612736 -Xms1610612736 -XX:MaxDirectMemorySize=402653184 -XX:MaxMetaspaceSize=134217728 -Dlog.file=/home/work/hdd5/yarn/zjyprc-analysis/nodemanager/application_1578903621081_4785/container_e08_1578903621081_4785_01_000051/taskmanager.log -Dlog4j.configuration=file:./log4j.properties org.apache.flink.yarn.YarnTaskExecutorRunner -D taskmanager.memory.shuffle.max=268435456b -D taskmanager.memory.framework.off-heap.size=134217728b -D taskmanager.memory.framework.heap.size=134217728b -D taskmanager.memory.managed.size=1476395008b -D taskmanager.cpu.cores=1.0 -D taskmanager.memory.task.heap.size=1476395008b -D taskmanager.memory.task.off-heap.size=0b -D taskmanager.memory.shuffle.min=268435456b --configDir . -Djobmanager.rpc.address=zjy-hadoop-prc-st2805.bj -Dweb.port=0 -Dweb.tmpdir=/tmp/flink-web-4bf6cd3a-a6e1-4b46-b140-b8ac7bdffbeb -Djobmanager.rpc.port=36769 -Dtaskmanager.memory.managed.size=1476395008b -Drest.address=zjy-hadoop-prc-st2805.bj |- 101677 101671 101677 101677 (bash) 1 1 118030336 733 /bin/bash -c /opt/soft/openjdk1.8.0/bin/java -Dhadoop.root.logfile=syslog -Xmx1610612736 -Xms1610612736 -XX:MaxDirectMemorySize=402653184 -XX:MaxMetaspaceSize=134217728 -Dlog.file=/home/work/hdd5/yarn/zjyprc-analysis/nodemanager/application_1578903621081_4785/container_e08_1578903621081_4785_01_000051/taskmanager.log -Dlog4j.configuration=file:./log4j.properties org.apache.flink.yarn.YarnTaskExecutorRunner -D taskmanager.memory.shuffle.max=268435456b -D taskmanager.memory.framework.off-heap.size=134217728b -D taskmanager.memory.framework.heap.size=134217728b -D taskmanager.memory.managed.size=1476395008b -D taskmanager.cpu.cores=1.0 -D taskmanager.memory.task.heap.size=1476395008b -D taskmanager.memory.task.off-heap.size=0b -D taskmanager.memory.shuffle.min=268435456b --configDir . -Djobmanager.rpc.address=zjy-hadoop-prc-st2805.bj -Dweb.port=0 -Dweb.tmpdir=/tmp/flink-web-4bf6cd3a-a6e1-4b46-b140-b8ac7bdffbeb -Djobmanager.rpc.port=36769 -Dtaskmanager.memory.managed.size=1476395008b -Drest.address=zjy-hadoop-prc-st2805.bj 1> /home/work/hdd5/yarn/zjyprc-analysis/nodemanager/application_1578903621081_4785/container_e08_1578903621081_4785_01_000051/taskmanager.out 2> /home/work/hdd5/yarn/zjyprc-analysis/nodemanager/application_1578903621081_4785/container_e08_1578903621081_4785_01_000051/taskmanager.err
{code}
I suspect there are some leaks or unexpected offheap memory usage.



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